
   27-Oct-2021 12:05:52 +0200

rootdir = Y:\Biophysics\Experiments\dRT-DC\211026_Faruq_2Wildbats\
sampleName = bat2_8nlps_Cold
measNums = 1 2 3 4 5 6 
frameNums = 3000 3000 3000 3000 3000 3000 
pixSizeReal = 0.34
pixSizeRec = 0.34
exportMatName = _data_export
firstImageBeforeChannelBegin = 1
lastImageAfterChannelEnd = 1
createResultSubDir = 1
writeStatImages = 1
writeImages = 0
enableFlag = 0
areaRatioFilterLevel = 0.7
areaRatioMax = 1.2
Converting 'M1_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2822 cell sequences
cell traces covers the whole channel: 0 cell sequences
load video
Error using <a href="matlab:matlab.internal.language.introspective.errorDocCallback('VideoReader/init', 'C:\Program Files\MATLAB\R2018b\toolbox\matlab\audiovideo\@VideoReader\VideoReader.m', 611)" style="font-weight:bold">VideoReader/init</a> (<a href="matlab: opentoline('C:\Program Files\MATLAB\R2018b\toolbox\matlab\audiovideo\@VideoReader\VideoReader.m',611,0)">line 611</a>)
Unable to determine the codec required.

Error in <a href="matlab:matlab.internal.language.introspective.errorDocCallback('VideoReader', 'C:\Program Files\MATLAB\R2018b\toolbox\matlab\audiovideo\@VideoReader\VideoReader.m', 176)" style="font-weight:bold">VideoReader</a> (<a href="matlab: opentoline('C:\Program Files\MATLAB\R2018b\toolbox\matlab\audiovideo\@VideoReader\VideoReader.m',176,0)">line 176</a>)
            obj.init(fileName);

Error in <a href="matlab:matlab.internal.language.introspective.errorDocCallback('CellPosDeformEval43', 'D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\CellPosDeformEval43.m', 173)" style="font-weight:bold">CellPosDeformEval43</a> (<a href="matlab: opentoline('D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\CellPosDeformEval43.m',173,0)">line 173</a>)
    vr = VideoReader([filedir fileAvi.name]);

Error in <a href="matlab:matlab.internal.language.introspective.errorDocCallback('aa_cellTrackAnalysis', 'D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\aa_cellTrackAnalysis.m', 16)" style="font-weight:bold">aa_cellTrackAnalysis</a> (<a href="matlab: opentoline('D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\aa_cellTrackAnalysis.m',16,0)">line 16</a>)
CellPosDeformEval43

close all
cleart all
{Undefined function or variable 'cleart'.
} 
clear all
Y:\Biophysics\Experiments\dRT-DC\211029_faruq_2wildbats\bat1_8nlps_Cold\Online\
M1
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 12:43:59	1069 pix	209 pix		860 pix = 292.4 µm
meas 	29-Oct-2021 12:47:29
end  	29-Oct-2021 12:47:28	1074 pix	215 pix		859 pix = 292.06 µm
change:
x1: 209 pix -> 215 pix = 2.04 µm
x2: 1069 pix -> 1074 pix = 1.7 µm
[1] begin
[2] end
[3] mean
select dataset: 
M2
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 12:48:17	1075 pix	215 pix		860 pix = 292.4 µm
meas 	29-Oct-2021 12:51:29
end  	29-Oct-2021 12:51:29	1077 pix	216 pix		861 pix = 292.74 µm
change:
x1: 215 pix -> 216 pix = 0.34 µm
x2: 1075 pix -> 1077 pix = 0.68 µm
[1] begin
[2] end
[3] mean
select dataset: 
M3
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 12:53:08	1076 pix	216 pix		860 pix = 292.4 µm
meas 	29-Oct-2021 12:56:09
end  	29-Oct-2021 12:56:09	1078 pix	219 pix		859 pix = 292.06 µm
change:
x1: 216 pix -> 219 pix = 1.02 µm
x2: 1076 pix -> 1078 pix = 0.68 µm
[1] begin
[2] end
[3] mean
select dataset: 
M4
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 12:56:49	1079 pix	220 pix		859 pix = 292.06 µm
meas 	29-Oct-2021 13:00:21
end  	29-Oct-2021 13:00:21	1086 pix	227 pix		859 pix = 292.06 µm
change:
x1: 220 pix -> 227 pix = 2.38 µm
x2: 1079 pix -> 1086 pix = 2.38 µm
[1] begin
[2] end
[3] mean
select dataset: 
M5
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 13:00:37	1092 pix	233 pix		859 pix = 292.06 µm
meas 	29-Oct-2021 13:03:53
end  	29-Oct-2021 13:03:52	1280 pix	1 pix		1279 pix = 434.86 µm
change:
x1: 233 pix -> 1 pix = -78.88 µm
x2: 1092 pix -> 1280 pix = 63.92 µm
[1] begin
[2] end
[3] mean
select dataset: 
M6
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 13:06:12	1071 pix	210 pix		861 pix = 292.74 µm
meas 	29-Oct-2021 13:09:11
end  	29-Oct-2021 13:09:11	1071 pix	216 pix		855 pix = 290.7 µm
change:
x1: 210 pix -> 216 pix = 2.04 µm
x2: 1071 pix -> 1071 pix = 0 µm
[1] begin
[2] end
[3] mean
select dataset: 
Y:\Biophysics\Experiments\dRT-DC\211029_faruq_2wildbats\bat1_8nlps_RT\Online\
M1
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 15:55:24	1064 pix	210 pix		854 pix = 290.36 µm
meas 	29-Oct-2021 15:58:39
end  	29-Oct-2021 15:58:39	1066 pix	210 pix		856 pix = 291.04 µm
change:
x1: 210 pix -> 210 pix = 0 µm
x2: 1064 pix -> 1066 pix = 0.68 µm
[1] begin
[2] end
[3] mean
select dataset: 
M2
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 15:58:43	1065 pix	210 pix		855 pix = 290.7 µm
meas 	29-Oct-2021 16:02:31
end  	29-Oct-2021 16:02:30	1065 pix	210 pix		855 pix = 290.7 µm
change:
x1: 210 pix -> 210 pix = 0 µm
x2: 1065 pix -> 1065 pix = 0 µm
[1] begin
[2] end
[3] mean
select dataset: 
M3
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 16:02:40	1065 pix	210 pix		855 pix = 290.7 µm
meas 	29-Oct-2021 16:07:18
end  	29-Oct-2021 16:07:18	1065 pix	210 pix		855 pix = 290.7 µm
change:
x1: 210 pix -> 210 pix = 0 µm
x2: 1065 pix -> 1065 pix = 0 µm
[1] begin
[2] end
[3] mean
select dataset: 
M4
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 16:07:26	1065 pix	210 pix		855 pix = 290.7 µm
meas 	29-Oct-2021 16:11:07
end  	29-Oct-2021 16:11:07	1066 pix	210 pix		856 pix = 291.04 µm
change:
x1: 210 pix -> 210 pix = 0 µm
x2: 1065 pix -> 1066 pix = 0.34 µm
[1] begin
[2] end
[3] mean
select dataset: 
M5
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 16:11:16	1065 pix	210 pix		855 pix = 290.7 µm
meas 	29-Oct-2021 16:16:19
end  	29-Oct-2021 16:16:19	1066 pix	210 pix		856 pix = 291.04 µm
change:
x1: 210 pix -> 210 pix = 0 µm
x2: 1065 pix -> 1066 pix = 0.34 µm
[1] begin
[2] end
[3] mean
select dataset: 
M6
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 16:17:18	1065 pix	210 pix		855 pix = 290.7 µm
meas 	29-Oct-2021 16:21:14
end  	29-Oct-2021 16:21:14	1065 pix	210 pix		855 pix = 290.7 µm
change:
x1: 210 pix -> 210 pix = 0 µm
x2: 1065 pix -> 1065 pix = 0 µm
[1] begin
[2] end
[3] mean
select dataset: 
Y:\Biophysics\Experiments\dRT-DC\211029_faruq_2wildbats\bat1_8nlps_Warm\Online\
M1
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 15:56:14	1066 pix	210 pix		856 pix = 291.04 µm
meas 	29-Oct-2021 15:58:55
end  	29-Oct-2021 15:58:55	1065 pix	207 pix		858 pix = 291.72 µm
change:
x1: 210 pix -> 207 pix = -1.02 µm
x2: 1066 pix -> 1065 pix = -0.34 µm
[1] begin
[2] end
[3] mean
select dataset: 
M2
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 16:00:01	1068 pix	213 pix		855 pix = 290.7 µm
meas 	29-Oct-2021 16:02:54
end  	29-Oct-2021 16:02:54	1062 pix	205 pix		857 pix = 291.38 µm
change:
x1: 213 pix -> 205 pix = -2.72 µm
x2: 1068 pix -> 1062 pix = -2.04 µm
[1] begin
[2] end
[3] mean
select dataset: 
M3
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 16:03:15	1064 pix	205 pix		859 pix = 292.06 µm
meas 	29-Oct-2021 16:07:04
end  	29-Oct-2021 16:07:04	1064 pix	206 pix		858 pix = 291.72 µm
change:
x1: 205 pix -> 206 pix = 0.34 µm
x2: 1064 pix -> 1064 pix = 0 µm
[1] begin
[2] end
[3] mean
select dataset: 
M4
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 16:08:47	1064 pix	205 pix		859 pix = 292.06 µm
meas 	29-Oct-2021 16:11:23
end  	29-Oct-2021 16:11:23	1063 pix	204 pix		859 pix = 292.06 µm
change:
x1: 205 pix -> 204 pix = -0.34 µm
x2: 1064 pix -> 1063 pix = -0.34 µm
[1] begin
[2] end
[3] mean
select dataset: 
M5
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 16:12:58	1064 pix	203 pix		861 pix = 292.74 µm
meas 	29-Oct-2021 16:15:57
end  	29-Oct-2021 16:15:56	1061 pix	202 pix		859 pix = 292.06 µm
change:
x1: 203 pix -> 202 pix = -0.34 µm
x2: 1064 pix -> 1061 pix = -1.02 µm
[1] begin
[2] end
[3] mean
select dataset: 
M6
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 16:17:10	1061 pix	203 pix		858 pix = 291.72 µm
meas 	29-Oct-2021 16:20:37
end  	29-Oct-2021 16:20:37	1063 pix	204 pix		859 pix = 292.06 µm
change:
x1: 203 pix -> 204 pix = 0.34 µm
x2: 1061 pix -> 1063 pix = 0.68 µm
[1] begin
[2] end
[3] mean
select dataset: 
Y:\Biophysics\Experiments\dRT-DC\211029_faruq_2wildbats\bat2_8nlps_Cold\Online\
M1
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 13:21:21	1065 pix	211 pix		854 pix = 290.36 µm
meas 	29-Oct-2021 13:23:58
end  	29-Oct-2021 13:23:58	1063 pix	210 pix		853 pix = 290.02 µm
change:
x1: 211 pix -> 210 pix = -0.34 µm
x2: 1065 pix -> 1063 pix = -0.68 µm
[1] begin
[2] end
[3] mean
select dataset: 
M2
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 13:24:04	1063 pix	209 pix		854 pix = 290.36 µm
meas 	29-Oct-2021 13:27:02
end  	29-Oct-2021 13:27:02	1066 pix	205 pix		861 pix = 292.74 µm
change:
x1: 209 pix -> 205 pix = -1.36 µm
x2: 1063 pix -> 1066 pix = 1.02 µm
[1] begin
[2] end
[3] mean
select dataset: 
M3
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 13:27:07	1066 pix	205 pix		861 pix = 292.74 µm
meas 	29-Oct-2021 13:30:33
[Warning: Polynomial is not unique; degree >= number of data points.] 
end  	29-Oct-2021 13:30:33	1778 pix	1041 pix		737 pix = 250.58 µm
change:
x1: 205 pix -> 1041 pix = 284.24 µm
x2: 1066 pix -> 1778 pix = 242.08 µm
[1] begin
[2] end
[3] mean
select dataset: 
M4
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 13:32:49	1068 pix	207 pix		861 pix = 292.74 µm
meas 	29-Oct-2021 13:39:28
end  	29-Oct-2021 13:39:28	1066 pix	205 pix		861 pix = 292.74 µm
change:
x1: 207 pix -> 205 pix = -0.68 µm
x2: 1068 pix -> 1066 pix = -0.68 µm
[1] begin
[2] end
[3] mean
select dataset: 
M5
type	date			position inlet	position outlet	channel legth
[Warning: Polynomial is not unique; degree >= number of data points.] 
begin	29-Oct-2021 13:40:38	1777 pix	1052 pix		725 pix = 246.5 µm
meas 	29-Oct-2021 13:43:44
[Warning: Polynomial is not unique; degree >= number of data points.] 
end  	29-Oct-2021 13:43:43	1856 pix	1049 pix		807 pix = 274.38 µm
change:
x1: 1052 pix -> 1049 pix = -1.02 µm
x2: 1777 pix -> 1856 pix = 26.86 µm
[1] begin
[2] end
[3] mean
select dataset: 
Y:\Biophysics\Experiments\dRT-DC\211029_faruq_2wildbats\bat2_8nlps_RT\Online\
M1
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 13:20:02	1069 pix	215 pix		854 pix = 290.36 µm
meas 	29-Oct-2021 13:23:45
end  	29-Oct-2021 13:23:45	1070 pix	216 pix		854 pix = 290.36 µm
change:
x1: 215 pix -> 216 pix = 0.34 µm
x2: 1069 pix -> 1070 pix = 0.34 µm
[1] begin
[2] end
[3] mean
select dataset: 
M2
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 13:23:51	1070 pix	215 pix		855 pix = 290.7 µm
meas 	29-Oct-2021 13:27:25
end  	29-Oct-2021 13:27:25	1071 pix	215 pix		856 pix = 291.04 µm
change:
x1: 215 pix -> 215 pix = 0 µm
x2: 1070 pix -> 1071 pix = 0.34 µm
[1] begin
[2] end
[3] mean
select dataset: 
M3
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 13:33:01	1070 pix	215 pix		855 pix = 290.7 µm
meas 	29-Oct-2021 13:32:58
end  	29-Oct-2021 13:33:08	1069 pix	215 pix		854 pix = 290.36 µm
change:
x1: 215 pix -> 215 pix = 0 µm
x2: 1070 pix -> 1069 pix = -0.34 µm
[1] begin
[2] end
[3] mean
select dataset: 
M4
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 13:33:11	1071 pix	215 pix		856 pix = 291.04 µm
meas 	29-Oct-2021 13:40:11
end  	29-Oct-2021 13:40:11	1066 pix	214 pix		852 pix = 289.68 µm
change:
x1: 215 pix -> 214 pix = -0.34 µm
x2: 1071 pix -> 1066 pix = -1.7 µm
[1] begin
[2] end
[3] mean
select dataset: 
M5
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 13:40:43	1069 pix	216 pix		853 pix = 290.02 µm
meas 	29-Oct-2021 13:44:27
end  	29-Oct-2021 13:44:27	1071 pix	215 pix		856 pix = 291.04 µm
change:
x1: 216 pix -> 215 pix = -0.34 µm
x2: 1069 pix -> 1071 pix = 0.68 µm
[1] begin
[2] end
[3] mean
select dataset: 
Y:\Biophysics\Experiments\dRT-DC\211029_faruq_2wildbats\bat2_8nlps_Warm\Online\
M1
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 16:46:30	1071 pix	212 pix		859 pix = 292.06 µm
meas 	29-Oct-2021 16:51:14
end  	29-Oct-2021 16:51:14	1072 pix	212 pix		860 pix = 292.4 µm
change:
x1: 212 pix -> 212 pix = 0 µm
x2: 1071 pix -> 1072 pix = 0.34 µm
[1] begin
[2] end
[3] mean
select dataset: 
M2
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 16:51:37	1072 pix	212 pix		860 pix = 292.4 µm
meas 	29-Oct-2021 16:54:36
end  	29-Oct-2021 16:54:36	1070 pix	211 pix		859 pix = 292.06 µm
change:
x1: 212 pix -> 211 pix = -0.34 µm
x2: 1072 pix -> 1070 pix = -0.68 µm
[1] begin
[2] end
[3] mean
select dataset: 
M3
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 16:54:40	1071 pix	214 pix		857 pix = 291.38 µm
meas 	29-Oct-2021 16:57:23
end  	29-Oct-2021 16:57:23	1074 pix	212 pix		862 pix = 293.08 µm
change:
x1: 214 pix -> 212 pix = -0.68 µm
x2: 1071 pix -> 1074 pix = 1.02 µm
[1] begin
[2] end
[3] mean
select dataset: 
M4
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 16:57:28	1069 pix	212 pix		857 pix = 291.38 µm
meas 	29-Oct-2021 17:00:13
end  	29-Oct-2021 17:00:13	1074 pix	213 pix		861 pix = 292.74 µm
change:
x1: 212 pix -> 213 pix = 0.34 µm
x2: 1069 pix -> 1074 pix = 1.7 µm
[1] begin
[2] end
[3] mean
select dataset: 
M5
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 17:00:34	1073 pix	213 pix		860 pix = 292.4 µm
meas 	29-Oct-2021 17:03:20
end  	29-Oct-2021 17:03:20	1071 pix	212 pix		859 pix = 292.06 µm
change:
x1: 213 pix -> 212 pix = -0.34 µm
x2: 1073 pix -> 1071 pix = -0.68 µm
[1] begin
[2] end
[3] mean
select dataset: 
M6
type	date			position inlet	position outlet	channel legth
begin	29-Oct-2021 17:03:24	1071 pix	212 pix		859 pix = 292.06 µm
meas 	29-Oct-2021 17:06:53
end  	29-Oct-2021 17:06:53	1070 pix	211 pix		859 pix = 292.06 µm
change:
x1: 212 pix -> 211 pix = -0.34 µm
x2: 1071 pix -> 1070 pix = -0.34 µm
[1] begin
[2] end
[3] mean
select dataset: 
CellPosDeformEval43

   12-Nov-2021 15:11:33 +0100

rootdir = Y:\Biophysics\Experiments\dRT-DC\211026_Faruq_2Wildbats\bat2\
sampleName = bat2_8nlps_Cold
measNums = 1 2 3 4 5 6 
frameNums = 3000 3000 3000 3000 3000 3000 
pixSizeReal = 0.34
pixSizeRec = 0.34
exportMatName = _data_export
firstImageBeforeChannelBegin = 1
lastImageAfterChannelEnd = 1
createResultSubDir = 1
writeStatImages = 1
writeImages = 0
enableFlag = 0
areaRatioFilterLevel = 0.7
areaRatioMax = 1.2
{Index exceeds the number of array elements (0).

Error in <a href="matlab:matlab.internal.language.introspective.errorDocCallback('CellPosDeformEval43', 'D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\CellPosDeformEval43.m', 81)" style="font-weight:bold">CellPosDeformEval43</a> (<a href="matlab: opentoline('D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\CellPosDeformEval43.m',81,0)">line 81</a>)
if underscore_idx(1) <= 9
} 
opentoline('D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\CellPosDeformEval43.m',81,0)
Y:\Biophysics\Experiments\dRT-DC\211026_Faruq_2Wildbats\bat2\bat2_8nlps_Cold\Online\
M1
type	date			position inlet	position outlet	channel legth
begin	26-Oct-2021 11:49:48	1067 pix	209 pix		858 pix = 291.72 µm
meas 	26-Oct-2021 11:54:29
[Warning: Polynomial is not unique; degree >= number of data points.] 
end  	26-Oct-2021 11:54:28	111 pix	-1124 pix		1235 pix = 419.9 µm
change:
x1: 209 pix -> -1124 pix = -453.22 µm
x2: 1067 pix -> 111 pix = -325.04 µm
[1] begin
[2] end
[3] mean
select dataset: 
M2
type	date			position inlet	position outlet	channel legth
begin	26-Oct-2021 11:54:32	1069 pix	214 pix		855 pix = 290.7 µm
meas 	26-Oct-2021 11:57:31
end  	26-Oct-2021 11:57:30	1280 pix	1 pix		1279 pix = 434.86 µm
change:
x1: 214 pix -> 1 pix = -72.42 µm
x2: 1069 pix -> 1280 pix = 71.74 µm
[1] begin
[2] end
[3] mean
select dataset: 
M3
type	date			position inlet	position outlet	channel legth
begin	26-Oct-2021 11:57:49	1067 pix	210 pix		857 pix = 291.38 µm
meas 	26-Oct-2021 12:01:40
end  	26-Oct-2021 12:01:39	1068 pix	210 pix		858 pix = 291.72 µm
change:
x1: 210 pix -> 210 pix = 0 µm
x2: 1067 pix -> 1068 pix = 0.34 µm
[1] begin
[2] end
[3] mean
select dataset: 
M4
type	date			position inlet	position outlet	channel legth
begin	26-Oct-2021 12:01:43	1069 pix	210 pix		859 pix = 292.06 µm
meas 	26-Oct-2021 12:04:27
end  	26-Oct-2021 12:04:27	1068 pix	209 pix		859 pix = 292.06 µm
change:
x1: 210 pix -> 209 pix = -0.34 µm
x2: 1069 pix -> 1068 pix = -0.34 µm
[1] begin
[2] end
[3] mean
select dataset: 
M5
type	date			position inlet	position outlet	channel legth
begin	26-Oct-2021 12:04:57	1070 pix	210 pix		860 pix = 292.4 µm
meas 	26-Oct-2021 12:07:43
end  	26-Oct-2021 12:07:43	1280 pix	1 pix		1279 pix = 434.86 µm
change:
x1: 210 pix -> 1 pix = -71.06 µm
x2: 1070 pix -> 1280 pix = 71.4 µm
[1] begin
[2] end
[3] mean
select dataset: 
M6
type	date			position inlet	position outlet	channel legth
begin	26-Oct-2021 12:07:53	1280 pix	1 pix		1279 pix = 434.86 µm
meas 	26-Oct-2021 12:10:56
end  	26-Oct-2021 12:10:56	1280 pix	1 pix		1279 pix = 434.86 µm
change:
x1: 1 pix -> 1 pix = 0 µm
x2: 1280 pix -> 1280 pix = 0 µm
[1] begin
[2] end
[3] mean
select dataset: 
Y:\Biophysics\Experiments\dRT-DC\211026_Faruq_2Wildbats\bat2\bat2_8nlps_RT\Online\
M1
type	date			position inlet	position outlet	channel legth
begin	26-Oct-2021 11:45:14	1066 pix	213 pix		853 pix = 290.02 µm
meas 	26-Oct-2021 11:48:44
end  	26-Oct-2021 11:48:44	1280 pix	1 pix		1279 pix = 434.86 µm
change:
x1: 213 pix -> 1 pix = -72.08 µm
x2: 1066 pix -> 1280 pix = 72.76 µm
[1] begin
[2] end
[3] mean
select dataset: 
M2
type	date			position inlet	position outlet	channel legth
begin	26-Oct-2021 11:49:37	1064 pix	213 pix		851 pix = 289.34 µm
meas 	26-Oct-2021 11:53:45
end  	26-Oct-2021 11:53:45	1064 pix	213 pix		851 pix = 289.34 µm
change:
x1: 213 pix -> 213 pix = 0 µm
x2: 1064 pix -> 1064 pix = 0 µm
[1] begin
[2] end
[3] mean
select dataset: 
M3
type	date			position inlet	position outlet	channel legth
begin	26-Oct-2021 11:53:53	1280 pix	1 pix		1279 pix = 434.86 µm
meas 	26-Oct-2021 11:57:19
end  	26-Oct-2021 11:57:19	1064 pix	213 pix		851 pix = 289.34 µm
change:
x1: 1 pix -> 213 pix = 72.08 µm
x2: 1280 pix -> 1064 pix = -73.44 µm
[1] begin
[2] end
[3] mean
select dataset: 
M4
type	date			position inlet	position outlet	channel legth
begin	26-Oct-2021 11:58:11	1063 pix	212 pix		851 pix = 289.34 µm
meas 	26-Oct-2021 12:02:22
end  	26-Oct-2021 12:02:22	1064 pix	213 pix		851 pix = 289.34 µm
change:
x1: 212 pix -> 213 pix = 0.34 µm
x2: 1063 pix -> 1064 pix = 0.34 µm
[1] begin
[2] end
[3] mean
select dataset: 
M5
type	date			position inlet	position outlet	channel legth
begin	26-Oct-2021 12:02:27	1065 pix	212 pix		853 pix = 290.02 µm
meas 	26-Oct-2021 12:07:23
end  	26-Oct-2021 12:07:23	1064 pix	212 pix		852 pix = 289.68 µm
change:
x1: 212 pix -> 212 pix = 0 µm
x2: 1065 pix -> 1064 pix = -0.34 µm
[1] begin
[2] end
[3] mean
select dataset: 
M6
type	date			position inlet	position outlet	channel legth
begin	26-Oct-2021 12:07:36	1064 pix	213 pix		851 pix = 289.34 µm
meas 	26-Oct-2021 12:11:14
end  	26-Oct-2021 12:11:14	1066 pix	215 pix		851 pix = 289.34 µm
change:
x1: 213 pix -> 215 pix = 0.68 µm
x2: 1064 pix -> 1066 pix = 0.68 µm
[1] begin
[2] end
[3] mean
select dataset: 
Y:\Biophysics\Experiments\dRT-DC\211026_Faruq_2Wildbats\bat2\bat2_8nlps_Warm\Online\
M1
type	date			position inlet	position outlet	channel legth
begin	26-Oct-2021 12:25:55	1061 pix	202 pix		859 pix = 292.06 µm
meas 	26-Oct-2021 12:29:27
end  	26-Oct-2021 12:29:27	1044 pix	190 pix		854 pix = 290.36 µm
change:
x1: 202 pix -> 190 pix = -4.08 µm
x2: 1061 pix -> 1044 pix = -5.78 µm
[1] begin
[2] end
[3] mean
select dataset: 
M2
type	date			position inlet	position outlet	channel legth
begin	26-Oct-2021 12:30:15	1066 pix	207 pix		859 pix = 292.06 µm
meas 	26-Oct-2021 12:33:18
end  	26-Oct-2021 12:33:18	1066 pix	208 pix		858 pix = 291.72 µm
change:
x1: 207 pix -> 208 pix = 0.34 µm
x2: 1066 pix -> 1066 pix = 0 µm
[1] begin
[2] end
[3] mean
select dataset: 
M3
type	date			position inlet	position outlet	channel legth
begin	26-Oct-2021 12:37:51	1067 pix	213 pix		854 pix = 290.36 µm
meas 	26-Oct-2021 12:40:37
end  	26-Oct-2021 12:40:37	1072 pix	214 pix		858 pix = 291.72 µm
change:
x1: 213 pix -> 214 pix = 0.34 µm
x2: 1067 pix -> 1072 pix = 1.7 µm
[1] begin
[2] end
[3] mean
select dataset: 
M4
type	date			position inlet	position outlet	channel legth
begin	26-Oct-2021 12:40:50	1072 pix	214 pix		858 pix = 291.72 µm
meas 	26-Oct-2021 12:43:22
end  	26-Oct-2021 12:43:22	1074 pix	213 pix		861 pix = 292.74 µm
change:
x1: 214 pix -> 213 pix = -0.34 µm
x2: 1072 pix -> 1074 pix = 0.68 µm
[1] begin
[2] end
[3] mean
select dataset: 
M5
type	date			position inlet	position outlet	channel legth
begin	26-Oct-2021 12:43:31	1074 pix	214 pix		860 pix = 292.4 µm
meas 	26-Oct-2021 12:46:47
end  	26-Oct-2021 12:46:47	1073 pix	215 pix		858 pix = 291.72 µm
change:
x1: 214 pix -> 215 pix = 0.34 µm
x2: 1074 pix -> 1073 pix = -0.34 µm
[1] begin
[2] end
[3] mean
select dataset: 
M6
type	date			position inlet	position outlet	channel legth
begin	26-Oct-2021 12:51:09	1071 pix	213 pix		858 pix = 291.72 µm
meas 	26-Oct-2021 12:51:05
end  	26-Oct-2021 12:51:16	1068 pix	214 pix		854 pix = 290.36 µm
change:
x1: 213 pix -> 214 pix = 0.34 µm
x2: 1071 pix -> 1068 pix = -1.02 µm
[1] begin
[2] end
[3] mean
select dataset: 
M7
type	date			position inlet	position outlet	channel legth
begin	26-Oct-2021 12:51:41	1068 pix	212 pix		856 pix = 291.04 µm
meas 	26-Oct-2021 12:55:41
end  	26-Oct-2021 12:55:41	1068 pix	211 pix		857 pix = 291.38 µm
change:
x1: 212 pix -> 211 pix = -0.34 µm
x2: 1068 pix -> 1068 pix = 0 µm
[1] begin
[2] end
[3] mean
select dataset: 
CellPosDeformEval43

   12-Nov-2021 15:14:17 +0100

rootdir = Y:\Biophysics\Experiments\dRT-DC\211026_Faruq_2Wildbats\bat2\
sampleName = bat2_8nlps_Cold
measNums = 1 2 3 4 5 6 
frameNums = 3000 3000 3000 3000 3000 3000 
pixSizeReal = 0.34
pixSizeRec = 0.34
exportMatName = _data_export
firstImageBeforeChannelBegin = 1
lastImageAfterChannelEnd = 1
createResultSubDir = 1
writeStatImages = 1
writeImages = 0
enableFlag = 0
areaRatioFilterLevel = 0.7
areaRatioMax = 1.2
{Index exceeds the number of array elements (0).

Error in <a href="matlab:matlab.internal.language.introspective.errorDocCallback('CellPosDeformEval43', 'D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\CellPosDeformEval43.m', 81)" style="font-weight:bold">CellPosDeformEval43</a> (<a href="matlab: opentoline('D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\CellPosDeformEval43.m',81,0)">line 81</a>)
if underscore_idx(1) <= 9
} 
CellPosDeformEval43

   12-Nov-2021 15:15:28 +0100

rootdir = Y:\Biophysics\Experiments\dRT-DC\211026_Faruq_2Wildbats\bat2\
sampleName = bat2_8nlps_Cold
measNums = 2 3 4 5 6 
frameNums = 3000 3000 3000 3000 3000 
pixSizeReal = 0.34
pixSizeRec = 0.34
exportMatName = _data_export
firstImageBeforeChannelBegin = 1
lastImageAfterChannelEnd = 1
createResultSubDir = 1
writeStatImages = 1
writeImages = 0
enableFlag = 0
areaRatioFilterLevel = 0.7
areaRatioMax = 1.2
{Index exceeds the number of array elements (0).

Error in <a href="matlab:matlab.internal.language.introspective.errorDocCallback('CellPosDeformEval43', 'D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\CellPosDeformEval43.m', 81)" style="font-weight:bold">CellPosDeformEval43</a> (<a href="matlab: opentoline('D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\CellPosDeformEval43.m',81,0)">line 81</a>)
if underscore_idx(1) <= 9
} 
close all
clear all
diary off

   4-Mar-2022 16:20:16 +0100

rootdir = ..\211026_Faruq_2Wildbats\
sampleName = 211026_Bat2_8nlps_Cold
measNums = 1 2 3 4 5 6 
frameNums = 3000 3000 3000 3000 3000 3000 
pixSizeReal = 0.34
pixSizeRec = 0.34
exportMatName = _data_export
firstImageBeforeChannelBegin = 1
lastImageAfterChannelEnd = 1
createResultSubDir = 1
writeStatImages = 1
writeImages = 0
enableFlag = 0
areaRatioFilterLevel = 0.7
areaRatioMax = 1.2
Converting 'M1_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2822 cell sequences
cell traces covers the whole channel: 1764 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 86
write results (1678 cells):
----------
----------
1678 cells written
Converting 'M2_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2227 cell sequences
cell traces covers the whole channel: 1264 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 62
write results (1202 cells):
----------
----------
1202 cells written
Converting 'M3_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2322 cell sequences
cell traces covers the whole channel: 1300 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 78
write results (1222 cells):
----------
----------
1222 cells written
Converting 'M4_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2207 cell sequences
cell traces covers the whole channel: 1180 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 66
write results (1114 cells):
----------
----------
1114 cells written
Converting 'M5_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2206 cell sequences
cell traces covers the whole channel: 1140 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 59
write results (1081 cells):
----------
----------
1081 cells written
Converting 'M6_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2197 cell sequences
cell traces covers the whole channel: 1097 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 69
write results (1028 cells):
----------
----------
1028 cells written
measurement: ..\211026_Faruq_2Wildbats\211026_Bat2_8nlps_Cold\Online\
cell counts:
M#	Th	wholeChannel	areaRatio	written
1	2822	1764	1678	1678
2	2227	1264	1202	1202
3	2322	1300	1222	1222
4	2207	1180	1114	1114
5	2206	1140	1081	1081
6	2197	1097	1028	1028
